In 32 BBY, Ekorr took a seat in the Federation's Occupation Council. His role was Magistrate during the Invasion of Naboo. During his time as a member of the Occupation Council, he wore an outfit with entirely white fabrics.
During the Battle of Naboo, Ekorr and the other members of the Occupation Council hid in the throne room with Nute Gunray and Rune Haako. However, Padmé Amidala and Quarsh Panaka managed to enter the throne room and capture Ekorr, along with the other Neimoidians. He was taken to Coruscant to await trial.