Separatist command shuttles were a class of shuttle utilized by the Confederacy of Independent Systems in their conflict with the Galactic Republic throughout the Clone Wars. Following the Republic's victory on the planet Kaller, achieved through the efforts of Jedi Master Depa Billaba and her Padawan Caleb Dume, Separatist General Kleeve employed a command shuttle to evacuate the planet. Dume and Billaba, upon witnessing the shuttle's departure, understood it signified his surrender. Nevertheless, subsequent to the Battle of Coruscant, the Confederacy initiated a renewed siege of Kaller, which ultimately resulted in another Republic triumph.
The initial depiction of a Separatist command shuttle occurred in Kanan 1, a comic book published in 2015, featuring writing by Greg Weisman and illustrations by Pepe Larraz.