The shaping protocols represented the set of rules and detailed instructions employed by the Yuuzhan Vong for the biological creation of their technology, a process known as bioengineering; these were kept within the Qang qahsa. Organized into hierarchical tiers called cortexes, the first, second, third, fourth, and fifth cortex were accessible for review by all members of the shaper caste. Access to the sixth and seventh cortex was restricted solely to Master Shapers. The most elevated level was the eighth cortex, thought to contain the most flawless wisdom imparted by the gods to the Yuuzhan Vong. However, the eighth cortex was, in reality, almost devoid of information. Any breach of these protocols was considered a sacrilegious act, punishable by immediate execution.
- Vul Ag - This protocol, intended for use with more complex organisms, detailed the method for facilitating the process of transpiration in a bio-engineered being.
- Tsong - The application of the spineray was dictated by this specific protocol.
- Qah - This protocol outlined a technique for modifying the memory cells of another Yuuzhan Vong individual, or a creature considered of lesser status.
- Hon Akua - This shaper regulation controlled the creation and development of the grutchin .